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      Dietary fiber guar gum-induced shift in gut microbiota metabolism and intestinal immune activity enhances susceptibility to colonic inflammation

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          ABSTRACT

          With an increasing interest in dietary fibers (DFs) to promote intestinal health and the growth of beneficial gut bacteria, there is a continued rise in the incorporation of refined DFs in processed foods. It is still unclear how refined fibers, such as guar gum, affect the gut microbiota activity and pathogenesis of inflammatory bowel disease (IBD). Our study elucidated the effect and underlying mechanisms of guar gum, a fermentable DF (FDF) commonly present in a wide range of processed foods, on colitis development. We report that guar gum containing diet (GuD) increased the susceptibility to colonic inflammation. Specifically, GuD-fed group exhibited severe colitis upon dextran sulfate sodium (DSS) administration, as evidenced by reduced body weight, diarrhea, rectal bleeding, and shortening of colon length compared to cellulose-fed control mice. Elevated levels of pro-inflammatory markers in both serum [serum amyloid A (SAA), lipocalin 2 (Lcn2)] and colon (Lcn2) and extensive disruption of colonic architecture further affirmed that GuD-fed group exhibited more severe colitis than control group upon DSS intervention. Amelioration of colitis in GuD-fed group pre-treated with antibiotics suggest a vital role of intestinal microbiota in GuD-mediated exacerbation of intestinal inflammation. Gut microbiota composition and metabolite analysis in fecal and cecal contents, respectively, revealed that guar gum primarily enriches Actinobacteriota, specifically Bifidobacterium. Guar gum also altered multiple genera belonging to phyla Bacteroidota and Firmicutes. Such shift in gut microbiota composition favored luminal accumulation of intermediary metabolites succinate and lactate in the GuD-fed mice. Colonic IL-18 and tight junction markers were also decreased in the GuD-fed group. Importantly, GuD-fed mice pre-treated with recombinant IL-18 displayed attenuated colitis. Collectively, unfavorable changes in gut microbiota activity leading to luminal accumulation of lactate and succinate, reduced colonic IL-18, and compromised gut barrier function following guar gum feeding contributed to increased colitis susceptibility.

          SUMMARY

          • Guar gum increased susceptibility to colitis

          • Guar gum-induced exacerbation of colitis is gut microbiota dependent

          • Guar gum-induced shift in microbiota composition favored the accumulation of luminal intermediate metabolites succinate and lactate

          • Guar gum-fed mice exhibited reduced colonic level of IL-18 and tight junction molecules.

          • Exogenous IL-18 administration partly rescued mice from guar gum-induced colitis susceptibility

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          DADA2: High resolution sample inference from Illumina amplicon data

          We present DADA2, a software package that models and corrects Illumina-sequenced amplicon errors. DADA2 infers sample sequences exactly, without coarse-graining into OTUs, and resolves differences of as little as one nucleotide. In several mock communities DADA2 identified more real variants and output fewer spurious sequences than other methods. We applied DADA2 to vaginal samples from a cohort of pregnant women, revealing a diversity of previously undetected Lactobacillus crispatus variants.
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            Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

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              Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

              DNA sequencing continues to decrease in cost with the Illumina HiSeq2000 generating up to 600 Gb of paired-end 100 base reads in a ten-day run. Here we present a protocol for community amplicon sequencing on the HiSeq2000 and MiSeq Illumina platforms, and apply that protocol to sequence 24 microbial communities from host-associated and free-living environments. A critical question as more sequencing platforms become available is whether biological conclusions derived on one platform are consistent with what would be derived on a different platform. We show that the protocol developed for these instruments successfully recaptures known biological results, and additionally that biological conclusions are consistent across sequencing platforms (the HiSeq2000 versus the MiSeq) and across the sequenced regions of amplicons.
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                Author and article information

                Journal
                Gut Microbes
                Gut Microbes
                Gut Microbes
                Taylor & Francis
                1949-0976
                1949-0984
                17 April 2024
                2024
                17 April 2024
                : 16
                : 1
                : 2341457
                Affiliations
                [a ]Department of Nutritional Sciences, The Pennsylvania State University; , University Park, PA, USA
                [b ]Department of Veterinary and Biomedical Sciences, The Pennsylvania State University; , University Park, PA, USA
                [c ]Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai; , New York, NY, USA
                [d ]INSERM U1016, team “Mucosal microbiota in chronic inflammatory diseases”, CNRS UMR 8104, Université Paris Cité; , Paris, France
                [e ]INSERM U1306, Microbiome-Host Interaction group, Institut Pasteur, Université Paris Cité; , Paris, France
                Author notes
                CONTACT Vishal Singh vxs28@ 123456psu.edu Department of Nutritional Sciences, The Pennsylvania State University, 110 Chandlee Bldg, University Park, PA 16802, USA
                Author information
                https://orcid.org/0000-0003-3577-1713
                Article
                2341457
                10.1080/19490976.2024.2341457
                11028019
                38630030
                0aee9308-8bf4-48fd-91c4-69b2b47d57a4
                © 2024 The Author(s). Published with license by Taylor & Francis Group, LLC.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License ( http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent.

                History
                Page count
                Figures: 7, Tables: 3, References: 98, Pages: 1
                Categories
                Research Article
                Research Paper

                Microbiology & Virology
                added fiber,dysbiosis,inflammatory bowel disease,succinate,lactate,bifidobacterium,interleukin-18 (il-18)

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