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      Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics 

      Bridge Simulation and Metric Estimation on Landmark Manifolds

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      Springer International Publishing

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          Computing Large Deformation Metric Mappings via Geodesic Flows of Diffeomorphisms

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            Landmark matching via large deformation diffeomorphisms.

            This paper describes the generation of large deformation diffeomorphisms phi:Omega=[0,1]3 Omega for landmark matching generated as solutions to the transport equation dphi(x,t)/dt=nu(phi(x,t),t),epsilon[0,1] and phi(x,0)=x, with the image map defined as phi(.,1) and therefore controlled via the velocity field nu(.,t),epsilon[0,1]. Imagery are assumed characterized via sets of landmarks {xn, yn, n=1, 2, ..., N}. The optimal diffeomorphic match is constructed to minimize a running smoothness cost parallelLnu parallel2 associated with a linear differential operator L on the velocity field generating the diffeomorphism while simultaneously minimizing the matching end point condition of the landmarks. Both inexact and exact landmark matching is studied here. Given noisy landmarks xn matched to yn measured with error covariances Sigman, then the matching problem is solved generating the optimal diffeomorphism phi;(x,1)=integral0(1)nu(phi(x,t),t)dt+x where nu(.)=argmin(nu.)integral1(0) integralOmega parallelLnu(x,t) parallel2dxdt +Sigman=1N[yn-phi(xn,1)] TSigman(-1)[yn-phi(xn,1)]. Conditions for the existence of solutions in the space of diffeomorphisms are established, with a gradient algorithm provided for generating the optimal flow solving the minimum problem. Results on matching two-dimensional (2-D) and three-dimensional (3-D) imagery are presented in the macaque monkey.
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              Variational principles for stochastic fluid dynamics

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                Author and book information

                Book Chapter
                2017
                September 08 2017
                : 79-91
                10.1007/978-3-319-67675-3_8
                d07e1390-4a0d-43c1-a114-d5657d222812
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