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      Impaired autophagy flux is associated with neuronal cell death after traumatic brain injury

      research-article
      1 , 1 , 1 , 1 , 1 , 2 , 1 , 2 , *
      Autophagy
      Taylor & Francis
      autophagy, autophagy flux, lysosome, neuronal cell death, traumatic brain injury, ACTB, actin, β; AIF1/IBA1, allograft inflammatory factor 1, AIFM1, apoptosis-inducing factor, mitochondrion-associated, 1, APC, adenomatous polyposis coli, ATG12, autophagy-related 12, ATG5, autophagy-related 5, ATG7, autophagy-related 7, CAPS12, caspase 12, CASP3, caspase 3, CCI, controlled cortical impact, CD68, CD68 molecule, CSPG4, chondroitin sulfate proteoglycan 4, CTSD, cathepsin D, GFP, green fluorescent protein, LAMP1, lysosomal-associated membrane protein 1, LAMP2, lysosomal-associated membrane protein 2, LC3, microtubule associated protein 1 light chain 3, RBFOX3, RNA binding protein, fox-1 homolog (C. elegans) 3, SPTAN1, spectrin, α, non-erythrocytic 1, SQSTM1, sequestosome 1, TBI, traumatic brain injury, ULK1, unc-51 like autophagy activating kinase 1

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          Abstract

          Dysregulation of autophagy contributes to neuronal cell death in several neurodegenerative and lysosomal storage diseases. Markers of autophagy are also increased after traumatic brain injury (TBI), but its mechanisms and function are not known. Following controlled cortical impact (CCI) brain injury in GFP-Lc3 (green fluorescent protein-LC3) transgenic mice, we observed accumulation of autophagosomes in ipsilateral cortex and hippocampus between 1 and 7 d. This accumulation was not due to increased initiation of autophagy but rather to a decrease in clearance of autophagosomes, as reflected by accumulation of the autophagic substrate SQSTM1/p62 (sequestosome 1). This was confirmed by ex vivo studies, which demonstrated impaired autophagic flux in brain slices from injured as compared to control animals. Increased SQSTM1 peaked at d 1–3 but resolved by d 7, suggesting that the defect in autophagy flux is temporary. The early impairment of autophagy is at least in part caused by lysosomal dysfunction, as evidenced by lower protein levels and enzymatic activity of CTSD (cathepsin D). Furthermore, immediately after injury both autophagosomes and SQSTM1 accumulated predominantly in neurons. This was accompanied by appearance of SQSTM1 and ubiquitin-positive puncta in the affected cells, suggesting that, similar to the situation observed in neurodegenerative diseases, impaired autophagy may contribute to neuronal injury. Consistently, GFP-LC3 and SQSTM1 colocalized with markers of both caspase-dependent and caspase-independent cell death in neuronal cells proximal to the injury site. Taken together, our data indicated for the first time that autophagic clearance is impaired early after TBI due to lysosomal dysfunction, and correlates with neuronal cell death.

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          Most cited references36

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          The role of Atg proteins in autophagosome formation.

          Macroautophagy is mediated by a unique organelle, the autophagosome, which encloses a portion of cytoplasm for delivery to the lysosome. Autophagosome formation is dynamically regulated by starvation and other stresses and involves complicated membrane reorganization. Since the discovery of yeast Atg-related proteins, autophagosome formation has been dissected at the molecular level. In this review we describe the molecular mechanism of autophagosome formation with particular focus on the function of Atg proteins and the long-standing discussion regarding the origin of the autophagosome membrane.
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            Guidelines for the use and interpretation of assays for monitoring autophagy.

            In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field.
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              A ubiquitin-like system mediates protein lipidation.

              Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. Apg8/Aut7 is an essential factor for autophagy in yeast. We previously found that the carboxy-terminal arginine of nascent Apg8 is removed by Apg4/Aut2 protease, leaving a glycine residue at the C terminus. Apg8 is then converted to a form (Apg8-X) that is tightly bound to the membrane. Here we report a new mode of protein lipidation. Apg8 is covalently conjugated to phosphatidylethanolamine through an amide bond between the C-terminal glycine and the amino group of phosphatidylethanolamine. This lipidation is mediated by a ubiquitination-like system. Apg8 is a ubiquitin-like protein that is activated by an E1 protein, Apg7 (refs 7, 8), and is transferred subsequently to the E2 enzymes Apg3/Aut1 (ref. 9). Apg7 activates two different ubiquitin-like proteins, Apg12 (ref. 10) and Apg8, and assigns them to specific E2 enzymes, Apg10 (ref. 11) and Apg3, respectively. These reactions are necessary for the formation of Apg8-phosphatidylethanolamine. This lipidation has an essential role in membrane dynamics during autophagy.
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                Author and article information

                Journal
                Autophagy
                Autophagy
                KAUP
                Autophagy
                Taylor & Francis
                1554-8627
                1554-8635
                28 January 2015
                December 2014
                : 10
                : 12
                : 2208-2222
                Affiliations
                [1 ]Shock, Trauma and Anesthesiology Research (STAR) Center; Department of Anesthesiology; University of Maryland School of Medicine ; Baltimore, MD USA
                [2 ]Department of Anatomy and Neurobiology; University of Maryland School of Medicine ; Baltimore, MD USA
                Author notes
                [* ]Correspondence to: Marta M. Lipinski; Email: mlipinski@ 123456anes.umm.edu
                Article
                981787
                10.4161/15548627.2014.981787
                4502690
                25484084
                0a47ac9f-d30d-4ce8-8a8c-6024cc773502
                © 2014 The Author(s). Published with license by Taylor & Francis© Chinmoy Sarkar, Zaorui Zhao, Stephanie Aungst, Boris Sabirzhanov, Alan I Faden, and Marta M Lipinski

                This is an Open Access article distributed under the terms of the Creative Commons Attribution-Non-Commercial License ( http://creativecommons.org/licenses/by-nc/3.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The moral rights of the named author(s) have been asserted.

                History
                : 15 September 2013
                : 14 April 2014
                : 30 May 2014
                Page count
                Figures: 5, Tables: 0, References: 55, Pages: 15
                Categories
                Basic Research Papers

                Molecular biology
                autophagy,autophagy flux,lysosome,neuronal cell death,traumatic brain injury,actb, actin,β; aif1/iba1, allograft inflammatory factor 1,aifm1, apoptosis-inducing factor, mitochondrion-associated, 1,apc, adenomatous polyposis coli,atg12, autophagy-related 12,atg5, autophagy-related 5,atg7, autophagy-related 7,caps12, caspase 12,casp3, caspase 3,cci, controlled cortical impact,cd68, cd68 molecule,cspg4, chondroitin sulfate proteoglycan 4,ctsd, cathepsin d,gfp, green fluorescent protein,lamp1, lysosomal-associated membrane protein 1,lamp2, lysosomal-associated membrane protein 2,lc3, microtubule associated protein 1 light chain 3,rbfox3, rna binding protein, fox-1 homolog (c. elegans) 3,sptan1, spectrin, α, non-erythrocytic 1,sqstm1, sequestosome 1,tbi, traumatic brain injury,ulk1, unc-51 like autophagy activating kinase 1

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